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Integrating functional data analysis with casebased reasoning for hypertension prognosis and diagnosis based on realworld electronic health records
BMC Medical Informatics and Decision Making volume 22, Article number: 149 (2022)
Abstract
Background
Hypertension is the fifth chronic disease causing death worldwide. The early prognosis and diagnosis are critical in the hypertension care process. Inspired by human philosophy, CBR is an empirical knowledge reasoning method for early detection and intervention of hypertension by only reusing electronic health records. However, the traditional similarity calculation method often ignores the internal characteristics and potential information of medical examination data.
Methods
In this paper, we first calculate the weights of input attributes by a random forest algorithm. Then, the risk value of hypertension from each medical examination can be evaluated according to the input data and the attribute weights. By fitting the risk values into a risk curve of hypertension, we calculate the similarity between different community residents, and obtain the most similar case according to the similarity. Finally, the diagnosis and treatment protocol of the new case can be given.
Results
The experiment data comes from the medical examination of Tianqiao Community (Tongling City, Anhui Province, China) from 2012 to 2021. It contains 4143 community residents and 43,676 medical examination records. We first discuss the effect of the influence factor and the decay factor on similarity calculation. Then we evaluate the performance of the proposed FDACBR algorithm against the GRACBR algorithm and the CSCBR algorithm. The experimental results demonstrate that the proposed algorithm is highly efficient and accurate.
Conclusions
The experiment results show that the proposed FDACBR algorithm can effectively describe the variation tendency of the risk value and always find the most similar case. The accuracy of FDACBR algorithm is higher than GRACBR algorithm and CSCBR algorithm, increasing by 9.94 and 16.41%, respectively.
Introduction
According to the China Cardiovascular Disease Report, there are currently 270 million adult hypertensive patients and 290 million cardiovascular disease patients in China [1]. A systematic analysis of data reveals that China is one of the top nine countries with the most severe rises in both male and female morbidity rates of hypertension [2]. Hypertension has posed a severe threat to public health, and it creates a lot of chain problems. On the one side, hypertensive patients are more likely to develop diabetes, heart failure, angina pectoris, myocardial infarction, and other adverse health outcomes. On the other side, hypertension costs the country about 366 billion in 2020, and the annual cost is rising substantially [3]. However, due to the developing symptoms of hypertension being mostly hidden, most people do not know they have prehypertension or already have hypertension. Therefore, the early prognosis and diagnosis is a critical step in the hypertension care process.
Using of data from electronic health record (EHR) has shown great promise for the early detection of chronic disease [4,5,6]. Various methods have been proposed to provide disease prediction and clinical decisionmaking aid based on retrospective electronic health records data, such as regression model [7], decisionmaking tree [8], recurrent neural network [9], and casebased reasoning (CBR) [10]. Inspired by human philosophy, CBR is an empirical knowledge reasoning method to find the recorded case most relevant to the target case, which avoids the training process of machine learning algorithms. The recorded case that has occurred in the past is referred to as the source case, and the source cases are used to guide the solution of the target case. Because of its better learning capability and interpretability than the rulebased and modelbased reasoning algorithm, CBR has been widely used in medical diagnosis [11].
As mentioned above, the core idea of CBR is to handle similar problems. In the medical field, the diagnosis and treatment protocol of the new case can be given according to the most similar source case in the case base. However, the traditional CBR algorithms tend to focus on crosssectional study in the medical field and ignore the impact of time. As shown in Fig. 1, the weights of Zhang and Wang are the same in September. But we do not consider that the importance of A and B remain the same in October. The main reason is that the various tendencies of two people are significantly different. Obviously, the similarity between source case and target case is also affected by time. The more recent the history information is, the more impact the time factor has.
In addition, although the community health service stations organize free medical examinations every half year, some community residents do not attend continuously. Therefore, for realworld electronic health records, the time and frequency of medical examination for different people may be different as well. In this case, how to evaluate the similarity between two people is of great importance.
Because of the aforementioned limitations mentioned above, we first analyze and evaluate the risk value of hypertension based on the medical examination data of community resident. As each community resident has multiple medical examination records, these data are fitted into a risk curve of hypertension for each resident based on functional data analysis (FDA) technique. Then, we can calculate the similarity between two different curves, which can be defined as the similarity between the recorded case and the target case. Finally, a novel FDAbased CBR model named FDACBR is proposed in this paper.
The remainder of this paper is listed as follows: “Related work” section presents the related work. “Material and method” section proposes the material and method. “Discussion” section demonstrates the experimental results. Finally, the conclusions and improvement directions are presented in section “Conclusions”.
Related work
Since Roger Schank first came up with CBR in 1982, CBR has become one of the prominent reasoning mechanisms, and has been widely used in medical diagnosis, industrial production and engineering planning. Using the previous experience or knowledge, CBR can realize the reuse of essential knowledge and effectively extract the complex rules. The processing of the CBR system contains case reuse, case retrieve, case revise, and case retain.
As is wellknown, the similarity calculation between the target case and the source cases is the critical step for case retrieval. Therefore, similarity calculation has become a research hotspot recently. Euclidean distance function and Mahalanobis distance function are the most commonly used distance functions of similarity in many studies [12, 13].
Some studies integrate Cosine similarity or Jaccard similarity into the CBR system, which makes the applicability of similarity measure of the traditional CBR widely extended. Zhang et al. [14] calculate the angle between two eigenvectors by using the cosine theorem and Euclidean distance, which is defined as the Cosine similarity. In the meantime, the traditional singlecategory attribute is extended to relative entropy modelbased multiattribute. Baharav et al. [15] use Jaccard distance to measure similarity between sample sets. Minhashes are employed to efficiently estimate these similarities. Chen et al. [16] present an emergency decision model based on grey relational analysis, which can effectively quantify the attribute weights and the similarity for the heterogeneous multiattributes decisionmaking problem.
In addition, there are so many risk factors for hypertension, i.e. obesity, smoking, alcohol consumption and waistline. A reasonable weight assignment of attributes has a significance influence on the decision result. Multivariate logistic regression model [17] and cox regression model [18] are the most representative risk prediction model. However, with the growth of data in volume and dimensionality, the ability of data mining algorithms to deal with massdata becomes more important. Some classification based data mining technique, such as random forest [19] and SVM [20], has performed well for multilabel classification using knowledgedriven features. It also can reduce the complexity of the model by reducing the number of features required to train a machine learning model.
In recent years, with the rapid development of machine learning techniques, some machine learning algorithms have been used to learn the similarity between two record cases. Zhang et al. [21] adopt the earth mover’s distance as the similarity between two dense images, which is used for classification. Vij et al. [22] present a machine learningbased approach to find out the similarity between two texts. Unfortunately, although machine learning techniquebased algorithms are very useful, these algorithms are not widely used due to lack of samples.
In summary, distance measure function based similarity calculation method can only reflect the relationship in spatial location, but ignores the time series and variation tendency of the record cases. Fortunately, functional data analysis is a statistical analysis technique especially suited for the analysis of curves, which can be used for s table estimates and accurate predictions [23]. To overcome the above shortcomings, functional data analysis is a suitable method to capture the time series similarity of two data series in the system.
Material and method
This study received ethical approval from the Ethics Committee of Tongling Municipal Hospital and Anhui Medical University. The study was performed in compliance with the World Medical Association Declaration of Helsinki on Ethical Principles for Medical Research Involving Human Subjects, and research regulations of the country. Considering retrospective nature of the study, Informed consent was waived by the Ethics Committee of Tongling Municipal Hospital.
Material
The data comes from the medical examination of the Tianqiao Community (Tongling City, Anhui Province, China) from 2012 to 2021. It contains 4143 community residents and 43,676 medical examination records. Each record includes more than 100 attributes, such as demographic information, physical examination, physiology, biochemistry, and so on. As shown in Table 1, the quantization assignment method is OneHot encoding. Because of the community health service station organizes free medical examination in March and September each year, the time of medical examination can be marked with its ordinal number. For example, the medical examination in March 2012 is marked as “1”. Similarly, September 2012 and September 2021 can be marked as “2” and “20” separately.
Method
In this subsection, we describe the novel FDAbased CBR model in detail. Firstly, we calculate the weights of input attributes by random forest algorithm. Secondly, for every community resident, the risk value of hypertension from each medical examination can be evaluated according to the input data and the attribute weights. Then, these continuous or not completely continuous risk values are fitted into a curve of risk value by using the medical examination time as the variable. Based on this, we can calculate the similarity between two curves, and the most similar case is extracted according to the similarity. Finally, the diagnosis and treatment protocol of the new case can be given.
The case extract strategy is as follows: when the similarity between the new case and the source case is over 90%, we can directly reuse the diagnosis and treatment protocol of the source case. When the similarity is between 70 and 90%, the diagnosis and treatment protocol of the source case can be regarded as an alternative treatment plan. When the similarity is between 60 and 70%, the extracted case can be used as an auxiliary reference plan. The whole workflow of FDACBR is shown in Fig. 2.
Weight assignment based on random forest algorithm
In order to make the weight calculation of attributes more reasonable, a random forest algorithm is employed in this paper. Random forest algorithm combines different decision trees (decision tree, DT). Each decision tree depends on the values of independently sampled random vectors. As shown in Fig. 3, the weight assignment is obtained by casting a vote for the most effective class. Assuming that each case is represented by an ndimensional feature vector X = {x_{1},x_{2},…,x_{n}}, the weight vector of the attributes can be described as follows: W = {w_{1}, w_{2},…, w_{n}}. The algorithm flow is listed as follows:

(1)
S = {S_{1},S_{2},…,S_{k}} are sampled randomly from the medical examination data, and the bootstrap sampling method is employed in this process;

(2)
Different decision trees are constructed based on S. During the construction phase of each decision tree, when the value of Gini(t) increases, less available information can be gained. Therefore, the total Gini value of all derived nodes should be less than that of the parent node. The minimum Gini value is used as the best splitting standard of the nodes, calculated by Formula (1).
$$Gini\left( t \right) = 1  \mathop \sum \limits_{j = 1}^{k} \left[ {p\left( {j{}t} \right)} \right]^{2}$$(1)where p(jt) denotes the probability of risk class j at node t.

(3)
Each decision tree votes for the most effective classification, and the vote results determine the optimal weight assignment. Assuming that D_{i} is the mean Gini decrease for ith variable. w_{i} is an ith variable weight, which can be calculated by Formula (2):
$$w_{i} = \frac{{D_{i} }}{{\mathop \sum \nolimits_{i = 1}^{n} D_{i} }}$$(2)
Curvefitting and similarity calculation
Based on weight assignment, the risk value of hypertension from the ith medical examination can be evaluated according to the input data and the attribute weights by Formula (3).
For community residents, each of them may have multiple medical examination results. Therefore, these dynamically changing risk values are fitted into a curve of risk value by using the medical examination time as the variable. Then, we can calculate the similarity between the two curves. The specific calculation steps are as follows: basis function selection, smoothing function, calibration function, and similarity calculation.
(1) Basis function
Basis function fitting is the most common method of FDA. Basis function is a series of independent function, which is defined as \(R\left( t \right) = \mathop \sum \limits_{k = 1}^{K} c_{k} \phi_{k} \left( t \right)\), where Φ_{k}(t) (k = 1, 2,…, K) are k selected basis functions, c_{k} is the coefficient matrix. In general, the Bspline basis function is more appropriate for aperiodic functional data. Assuming that the time interval [1, 20] (medical examination from March 2012 to September 2021) is divided into several subintervals [t_{i1},t_{i}], where t_{i} is the time of ith medical examination, risk_{i} is the risk value of hypertension from ith medical examination, 1 ≤ t_{0} < t_{1} < … < t_{N} ≤ 20. B_{i,k}(t) is defined recursively as the Bspline basis function of order k by Formula (4) and Formula (5).
(2) Smoothing function
According to the basis function, the coefficient vector should be calculated by the least square method. That is to minimize the following formula.
where Risk and C are the matrix form of {risk_{j}}, {c_{k}}.
(3) Calibration function
Unlike point data, the properties of functional data include amplitude and phase. Therefore, the purpose of the calibration function is to move the misaligned variable to the same standard by adjusting the translation parameters. Let the translation parameter be δ_{i}, R_{i}^{*}(t) = R_{i}(t + δ_{i}), δ_{i} can be calculated by minimizing Formula (7).
where \(\hat{\mu }\left( t \right)\) is the mean value of all the functional data in [t_{1},t_{2}]. This mean value function is updated iteratively until it stabilizes, which makes the translation parameter more rational.
(4) Similarity calculation
The resampling technique is used in this paper to collect data. Firstly, we transform the risk scores into functional data using FDA, and then define the continuity of data exactly by using function properties. In the calculation process, the fitting function is divided into 19 intervals: {(1,2),(2,3),…(19,20)}. We can obtain the continuous function in any one of these intervals. Then the interval similarities are calculated separately and integrated into the global similarity with decay factor, which makes the calculation more accurate.
The interval similarity between two curves is calculated in two parts: actual distance and derived function distance. The actual distance describes the data discrepancy, and the derived function distance describes the discrepancy of inherent characteristics. Let R_{org}(t) and R_{tgt}(t) be the functional descriptions of the original case and target case, respectively. Then the actual distance d_{act} between R_{org}(t) and R_{tgt}(t) on [t_{1},t_{2}] can be calculated by Formula(8).
Let R′_{org}(t) and R′_{tgt}(t) be the derived functions of R_{org}(t) and R_{tgt}(t) respectively. Then the derived function distance d_{der}(R′_{org}(t), R′_{tgt}(t)) on [t_{1},t_{2}] can be calculated by Formula(9)
Thus, two kinds of distance between the original case and target case can be aggregated into an integrated similarity Sim(org, tgt) as follows:
where θ is the influence factor of actual distance and derived function distance. Briefly, θ ∈ (0, 0.5) indicates that we are more concerned with the variation tendency of the risk value of medical examination data.
(5) Decay factor
As discussed above, recent information has more influence on similarity calculation. The decay factor μ is employed to reflect the importance of the historical information, which decreases as time pass on. The similarity with decay factor can be calculated as follows:
Discussion
Weight assignment
With the aid of the grid searching technique (GridSearchCV), the depth and number of decision trees are set to 5 and 500 separately. The experimental result is shown in Table 2.
As shown in Table 2, the top 10 weighted attributes are age, diabetes, exercise frequency, BMI, total cholesterol, smoking, drinking, central obesity, triglyceride, and blood urea. According to Formula (3), the risk value of hypertension from each medical examination can be evaluated according to the input data and the attribute weights. Table 3 shows a community resident’s risk value of hypertension in 10 consecutive medical examinations.
In the real world, this community resident is 52 years old. He does not drink or smoke. However, he seldom does exercise, and his BMI has been increasing since 2017. He was diagnosed with hypertension in 2019. The experimental result shows that the risk value can effectively reflect the hypertension risk of community residents.
Influence factor
In this experiment, we discuss the effect of the influence factor θ in Formula (8). In order to evaluate the performance of the proposed algorithm, we define “correct result” as follows: The doctors select 10 cases from the case base that are most similar to the target case in their mind. When the calculation result is one of these five cases, the calculation result is marked as “correct”. If not, it’s marked as “incorrect”. On this basis, we randomly select 100 community residents, and then we can obtain the accuracy of CBRbased algorithms by comparing the calculation results and the doctors. In this experiment, the decay factor is set to 0.8. Figure 4 shows the experiment results.
As shown in Fig. 4, when θ = 0.6, the accuracy is the highest of various situations. As the value of the influence factor increases or decreases, the accuracies are significantly decline. When θ = 0, the actual distance between curves is not considered, the accuracy is lowest. When θ = 1, the derived function distance has no effect on the similarity calculation. The accuracy is just a little higher than θ = 0. The experiment results indicate that both actual distance and derived function distance have a significant impact on similarity calculation. θ is set to 0.6 in the following experiments.
Decay factor
In this experiment, we consider the effect of decay factor μ on similarity calculation. Figure 5 shows the experiment results.
As shown in Fig. 5, when μ = 0, the accuracy is the lowest of various situations. The main reason is that the similarity calculation method ignores the history records and the variation tendency. Only the latest history record can be considered. As the decay factor increases, the accuracy increases as well. The experiment results illustrate that the delay factor can effectively reflect the influence of time on similarity calculation. In the meantime, when μ is greater than 0.8, the accuracy is a little lower. This experiment results indicate that the recent records have more impact than the old records, and the old records gradually lose their reference value. μ is set to 0.8 in the following experiment.
Performance evaluation of proposed algorithm
In this experiment, we evaluate the performance of the proposed FDACBR algorithm against the GRACBR algorithm [16] and CSCBR algorithm [14]. GRACBR algorithm is a grey relational analysis (GRA) based similarity calculation algorithm, which enables the CBR to quantify the similarity with heterogeneous multiattributes and makes the attribute weights assignment more reasonable by considering information correlation. CSCBR algorithm is a decision model based on Cosine similarity and Euclidean distance. Figure 6 shows the experiment results.
In Fig. 6, with the number of medical examinations of the new case increases, the accuracy of FDACBR increases as well. However, GRACBR and CSCBR are designed without consideration of the variation tendency of the risk value. Therefore, the change in the number of medical examinations has little impact on the accuracy of GRACBR and CSCBR.
In the meantime, it’s worth mentioning that the accuracy of proposed algorithm is lower than two other algorithms when the number is less than or equal 2. However, when the number is greater than 4, the accuracy of FDACBR is significantly higher than GRACBR and CSCBR. The accuracy of FDACBR is 9.94 and 16.41% higher than GRACBR and CSCBR when the number is equal to 10. The main reason is that it is hard to identify the most similar cases just by only one or two recent medical examination. The variation tendency of the risk value is difficult to describe when there is no enough data. At this time, reducing the value of influence factor is beneficial to improve the accuracy. In addition, the experiment results indicate that the proposed FDACBR algorithm can effectively reveal the internal characteristics of the medical examination data and find the most similar case. It provides an effective method for the establishment of personalized intervention model for hypertension and other chronic diseases.
Conclusions
Hypertension has posed a severe threat to public health, and it creates a lot of chain problems. In this paper, we present a novel FDAbased CBR model. Firstly, the weights of input attributes are calculated by random forest algorithm. Then, the risk value of hypertension from each medical examination is evaluated according to the input data and the attribute weights. By fitting the risk values into a risk curve of hypertension, we calculate the similarity between two curves and obtain the most similar case according to the similarity. The experiment results show that the accuracy of FDACBR algorithm is higher than GRACBR and CSCBR, increasing by 9.94% and 16.41% respectively. It provides an effective method for the establishment of personalized intervention model for hypertension and other chronic diseases.
However, as mentioned above, when the number of medical examinations of the new case is less than 3, the accuracy of FDACBR is a little lower than GRACBR. Therefore, how to adjust the similarity calculation process with the lack of input data is our future work.
Availability of data and materials
The data that support the findings of this study are available from Tongling Municipal Hospital but restrictions apply to the availability of these data, which were under license for the current study. Data are available from the corresponding author upon reasonable request and with permission of the Ethics Committee of Tongling Municipal Hospital and the Ethics Committee of Anhui Medical University.
Abbreviations
 HER:

Electronic health record
 CBR:

Casebased reasoning
 FDA:

Functional data analysis
 DT:

Decision tree
 GRA:

Grey relational analysis
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Acknowledgements
We would like to acknowledge the hard and dedicated work of all the staff that implemented the intervention and evaluation components of the study.
Funding
This work is supported by key research and development program of Anhui province, under Grant No. 202004a05020010; Natural Science Foundation of Universities of Anhui Province, under Grant No.KJ2020A0694; Key program in the youth elite support plan in universities of Anhui province, Grant No. gxyqZD2020043.
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This study received ethical approval from Ethics Committee of Tongling Municipal Hospital and Anhui Medical University. The study was performed in compliance with the World Medical Association Declaration of Helsinki on Ethical Principles for Medical Research Involving Human Subjects, and research regulations of the country. Considering retrospective nature of the study, Informed consent was waived by the Ethics Committee of Tongling Municipal Hospital.
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Qi, P., Wang, F., Huang, Y. et al. Integrating functional data analysis with casebased reasoning for hypertension prognosis and diagnosis based on realworld electronic health records. BMC Med Inform Decis Mak 22, 149 (2022). https://doi.org/10.1186/s12911022018947
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DOI: https://doi.org/10.1186/s12911022018947