 Research Article
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Optimal sequence of tests for the mediastinal staging of nonsmall cell lung cancer
BMC Medical Informatics and Decision Making volume 16, Article number: 9 (2016)
Abstract
Background
Nonsmall cell lung cancer (NSCLC) is the most prevalent type of lung cancer and the most difficult to predict. When there are no distant metastases, the optimal therapy depends mainly on whether there are malignant lymph nodes in the mediastinum. Given the vigorous debate among specialists about which tests should be used, our goal was to determine the optimal sequence of tests for each patient.
Methods
We have built an influence diagram (ID) that represents the possible tests, their costs, and their outcomes. This model is equivalent to a decision tree containing millions of branches. In the first evaluation, we only took into account the clinical outcomes (effectiveness). In the second, we used a willingnesstopay of € 30,000 per quality adjusted life year (QALY) to convert economic costs into effectiveness. We assigned a secondorder probability distribution to each parameter in order to conduct several types of sensitivity analysis.
Results
Two strategies were obtained using two different criteria. When considering only effectiveness, a positive computed tomography (CT) scan must be followed by a transbronchial needle aspiration (TBNA), an endobronchial ultrasound (EBUS), and an endoscopic ultrasound (EUS). When the CT scan is negative, a positron emission tomography (PET), EBUS, and EUS are performed. If the TBNA or the PET is positive, then a mediastinoscopy is performed only if the EBUS and EUS are negative. If the TBNA or the PET is negative, then a mediastinoscopy is performed only if the EBUS and the EUS give contradictory results. When taking into account economic costs, a positive CT scan is followed by a TBNA; an EBUS is done only when the CT scan or the TBNA is negative.
This recommendation of performing a TBNA in certain cases should be discussed by the pneumology community because TBNA is a cheap technique that could avoid an EBUS, an expensive test, for many patients.
Conclusions
We have determined the optimal sequence of tests for the mediastinal staging of NSCLC by considering sensitivity, specificity, and the economic cost of each test. The main novelty of our study is the recommendation of performing TBNA whenever the CT scan is positive. Our model is publicly available so that different experts can populate it with their own parameters and reexamine its conclusions. It is therefore proposed as an evidencebased instrument for reaching a consensus.
Background
Lung cancer is a very common tumor in the developed world and the leading cause of cancer death. Lung cancer can be classified into two major types: smallcell lung cancer and NSCLC. The former, which accounts for 20 % of cases [1], is usually inoperable and treatable only with chemotherapy or chemoradiotherapy. In contrast, when it is limited to the lung, to certain adjacent structures, and to lymph nodes proximal to the lung, NSCLC can be treated with surgical resection. However, more than 80 % of NSCLC patients cannot be treated with surgery because the disease is out of control due to a metastasis [2]. A disappointing fact is that a high percentage of patients that may benefit from surgery die of lung cancer. A correct assessment at an early stage of the disease—the staging phase—would help to determine which patients may benefit from surgery and, in turn, to avoid dangerous, painful, and unnecessary surgery when metastasis has already occurred.
When there are no distant metastases, mediastinal staging, i.e., determining whether malignant mediastinal lymph nodes are present or absent, is the most important prognostic factor in patients with NSCLC and, consequently, determines the therapeutic strategy. Various techniques are available to study the mediastinum, such as noninvasive imaging techniques (CT scan and PET) and minimally invasive endoscopic techniques (TBNA, EBUS, EUS), involving varying degrees of sensitivity and specificity; more invasive surgical techniques include mediastinoscopy. The main treatment options for lung cancer include surgery, chemotherapy, radiation therapy, chemoradiotherapy, palliative and supportive care, and no treatment. The applicability of each treatment depends on the stage of the tumor. Due to the variety of available tests and treatments for NSCLC, each one with its pros and cons and different economic costs, there is a vigorous debate among specialists about which tests and treatments should be used to strike a balance between effectiveness andcosts [3, 4].
In an attempt to clarify this controversy using an evidencebased approach [5–7], we have built an ID for this problem from the perspective of the Spanish public health system. The ID was evaluated twice, first without considering economic costs, and then by converting costs into effectiveness using a willingnesstopay of €30,000 per QALY, the shadow threshold estimated for that health system [8, 9]. We performed several types of sensitivity analysis to study the effect of the uncertainty in the numerical parameters of the model.
This paper has been written following the Consolidated Health Economic Evaluation Reporting Standards [10].
Methods
Preliminaries
This section describes IDs, the explanation capabilities available in the software tool used to build the model, and the basic principles of costeffectiveness analysis in medicine.
Influence diagrams
Decision trees [11] are a traditional framework for modeling decision problems in medicine. Since decision trees explicitly represent all the possible decision scenarios, the size of the model grows exponentially with the number of variables. That combinatorial explosion makes the use of decision trees prohibitive for medium or large problems.
IDs [12, 13] arose as an alternative to decision trees. Their compactness, based on a causal graph, eases communication with experts, simplifies the solution and debugging, and thus makes IDs appropriate for much larger decision problems.
We start by considering an example of a medical ID. A physician has to decide whether to treat or not a patient, who may suffer from a disease (X). Before deciding how to treat the patient (D), the physician can perform a test (decision T), whose result (Y) will help determine whether the patient suffers from the disease. The overall effectiveness results from substracting the morbidity of the test (U_{1}) from the quality of life that results from treating the patient (U_{2}).
Formally, an ID consists of an acyclic directed graph having three disjoint sets of nodes: decision nodes V_{ D } (graphically represented by squares or rectangles), chance nodes V_{ C } (circles or ovals), and utility nodes V_{ U } (diamonds or hexagons). Decision nodes represent the actions under the direct control of the decision maker. Chance nodes represent uncertain events. In medical IDs, utility nodes represent medical outcomes and costs (quality of life, morbidity, mortality, economic cost...). Here, two types of utility nodes are distinguished: ordinary, having parents that are chance and decision nodes, and supervalue (SVN), having parents that are other utility nodes [14]. Given that each node represents a variable, we will use the concepts of node and variable interchangeably. We assume that all the chance and decision variables are discrete.
IDs contain three types of arcs, depending on the type of node they go into. Arcs into chance nodes represent probabilistic dependencies. Arcs into decision nodes represent availability of information or precedence relations between decisions. Arcs into ordinary utility nodes indicate the domain of the associated utility function; arcs into a SVN U indicate that the associated utility function is a combination of the utility functions of the parents of U.
For example, in Fig. 1X and Y are chance nodes, T and D are decision nodes, U_{1} and U_{2} are utility nodes, and the child of U_{1} and U_{2} is a SVN of type sum. Node X has a causal and probabilistic relationship with node Y. Variable X is not observable, is unknown when making decision D and there is thus no arc from node X to node D. However, variable Y is observable, its values are known when making decision D, and it can therefore be observed by the decision maker at that moment. This explains the arc pointing Y to node D.
We assume a path connects all the decision nodes, indicating the order in which decisions are made. Let n be the number of decisions in the ID. The total order of decisions {D_{0},D_{1},…,D_{n−1}} partitions the set of chance variables into the collection of sets {C_{0},C_{1},…,C_{ n }}, where C_{ i }, 0≤i<n, is the subset of chance variables known for D_{ i } but unknown for any previous decision, and C_{ n } is the set of unknown chance variables. Furthermore, the noforgetting hypothesis [15] is assumed, which states that the decision maker recalls all the previous decisions and observations.
For example, in Fig. 1 decision T precedes decision D, i.e., D_{0}=T and D_{1}=D. This order partitions the set of chance variables in the following way: \(\mathbf {C}_{0}=\varnothing, \mathbf {C}_{1}=\{Y\}\) and C_{2}={X}. This partition has a simple interpretation: no chance variable is observed before deciding on T, variable Y is observed after deciding on T but before deciding on D, and variable T is unknown or observed after deciding on D. Thus, when deciding on D, the decision maker knows the values of T and Y.
The quantitative information that defines an ID is given by (1) assigning to each chance node a conditional probability, (2) assigning to each ordinary utility node a realvalued function, and (3) assigning to each SVN a utilitycombination function. Conditional probabilities and utility functions of ordinary utility nodes are represented as tables. In the example, the quantitative information consists of the conditional probabilities P(x) and P(xy) and the utility functions ψ_{1}(x,d) and ψ_{2}(t).
The optimal policy for a decision D is a function that maps each configuration of the variables known in D onto the option of D that maximizes the expected utility. The purpose of evaluating an ID is to compute an optimal strategy composed of a set of optimal policies, one for each decision in the ID.
It is well known that inference in probabilistic graphical models, such as Bayesian networks and IDs, is an NPhard problem [16, 17]. Although the set of decisions is totally ordered in IDs, the search space of an ID solution algorithm grows exponentially with the number of variables. However, there are algorithms and software packages that can evaluate BNs and IDs for many realworld problems in less than a second.
In this paper, the ID was built using Elvira and OpenMarkov, two software tools for probabilistic graphical models [18, 19]. Debugging a probabilistic expert system based on an ID is very difficult because the output of the evaluation of a medium or large problem may be the result of thousands of mathematical operations such as sums, products, divisions, and maximizations. Explaining the reasoning is a key factor in the acceptance of expert systems in realworld domains like medicine. One example consists of explaining why the system recommends one action instead of another. Lacave et al. [20, 21] described how the explanation capabilities of Elvira were useful for building probabilistic medical models and how such capabilities can help make the probabilistic reasoning more understandable to human users. However, it is a very difficult task that has not yet been completely solved in the field of IDs [20].
Costeffectiveness analysis in medicine
If economic costs are included in a medical decision problem, the result is a problem with two criteria to optimize: effectiveness, measured in clinical units, usually QALYs, which we want to maximize, and cost, measured in monetary units, which we want to minimize^{1}. In medicine, this problem is typically solved with costeffectiveness analysis [22].
The goal of costeffectiveness analysis is to maximize the net health benefit (NHB) [23], which is defined as follows:
where Eis effectiveness, C is cost^{2}, and λ is used to convert effectiveness into cost or vice versa. Parameter λ is sometimes called willingness to pay and represents the maximum amount of money an individual is willing to sacrifice to gain a unit of effectiveness (health benefit). The value of λ is always positive but depends on each decision maker.
Construction of the model
This section describes the construction of MEDIASTINET, an ID for determining the optimal sequence of tests for the mediastinal staging of NSCLC. The model was developed with the help of a pneumologist during several oral interviews; the pneumologist is the third author of this paper. The perspective adopted in the model was that from the Spanish public health system. The primary decision maker is the Spanish Ministry of Health. Our model applies to patients that have lung cancer, presumably operable, with no distant metastases.
The model assumes that a CT scan is always performed. Silvestri et al. [24] state that a “CT scan is clearly an imperfect means of staging of the mediastinum, but it remains the best overall anatomic technique for studying the thorax”. Additionally, the authors highlight the importance of CT scan, a noninvasive test, for guiding the choice of nodes for the most invasive techniques.
Structure of the graph
The graph structure of the ID (see Fig. 2) was built manually following the expert’s knowledge of the variables involved in the problem and the causal relations between them.
Chance variables
The TNM classification uses three factors (T, N, and M) to describe the extent of a cancer. The N factor indicates whether regional lymph nodes are affected. Given that the objective is the mediastinal staging of NSCLC, the value of N [1] has been represented by the chance variable N2_N3. Even though N takes on four possible values, from N0 to N3, it has been modeled here as a binary variable because cancers are operable for groups N0 and N1, and inoperable for most of N2 and all of N3. The laboratory tests that can be performed are represented by binary variables CT_scan, TBNA, PET, EBUS, EUS, and MED (mediastinoscopy). Binary variable MED_Sv represents whether the patient survives mediastinoscopy.
Nodes representing test results (CT_scan, TBNA, PET, EBUS, EUS, EUS, and MED) have a causal and probabilistic relationship with node N2_N3. This justifies the arcs pointing from N2_N3. Moreover, we have drawn arcs from CT_scan to the other test result variables because the CT_scan result can influence their sensitivity and specificity.
Decision variables
Each decision on whether to perform a laboratory test has been represented by a variable with the prefix Dec_on its name. A node Dec_CT_scanwas not included because a CT scan is always done. The decision maker can perform the EBUS and EUS separately, or both at the same time; this is represented by node Dec_EBUS_EUS. These decisions forced the addition of a new state no_result to the variables TBNA, PET, EBUS, EUS, and MED, to reflect the fact that when a test is not performed, its result is not available. Variable Treatment represents the set of possible treatments; its states are thoracotomy, chemoradiotherapy, and no_treatment.
We included a node Treatment because the effectiveness of the tests is due to the guide they offer on which treatment to apply.
Utility nodes
Utility nodes in the ID of Fig. 2 can be grouped into three sets, each surrounded by a dashed rectangle.
The first group represents effectiveness, measured in QALYs. The node Total_QALE accumulates the overall quality adjusted life expectancy(QALE) of patients [25]. This node sums the morbidities due to medical tests, and the utility function of Net_QALE. This last node represents the QALE of patients considering that they can die due to the treatment or to the mediastinoscopy, and is the product of three nodes: Surv_QALE represents the QALE of the survivors of the tests and treatments; MED_Survival indicates whether the patient survives the mediastinoscopy; and Immediate_Survival represents the immediate survival rate after the treatment.
The second group of utility nodes represents cost. Total_Economic_Cost is the total cost. Its parents in the graph represent the costs of tests and treatments.
Finally, the third group relates cost and effectiveness: λ^{−1} represents (the inverse of) the willingness to pay, Weighted_Econ_Cost represents λ^{−1}·C, and Net_Health_Benefit the NHB (Eq. 1). The reason for using λ^{−1} instead of λ is to be able to obtain the optimal policy regardless of cost, as shown below.
Table 1 presents a list of all the variables, along with the type of variable (chance, decision or utility), the domain (discrete or continuous), and the set of possible values (domain).
Elicitation of probabilities and utilities
There are two types of uncertainty in a model.Firstorder uncertainty reflects that the outcomes of some variables are not under the control of the decision maker. For example, even if a doctor knows that the prevalence of a disease is 0.05, s/he cannot know with certainty whether a person randomly chosen has the disease. Secondorder uncertainty reflects that the parameters of the probability distribution are not known with certainty [26, 27]. For example, a doctor may not know with certainty the value of the prevalence of a disease, but s/he could assume that its distribution follows a Beta with parameters α=5 and β=95. In this example, the prevalence of the disease is a parameter of the model, while α and β are the parameters of the associated secondorder distribution.
The next step in the construction of the model was to complete the quantitative part of the ID, consisting of a set of probability and utility potentials. There were 46 independent parameters. Each parameter of the model, except costs, had an associated secondorder probability:

Beta distributions were assigned to the nonextreme probabilities of the prevalence of the disease, the sensitivities and the specificities of tests, and the survival rates, as the data that inform each probability parameter of the model are binomial (m cases of interest are observed from a set of n observations) [27], and the Beta distribution is the conjugate to binomial data [28].

Uniform distributions were assigned to the morbidities of the tests. As the literature provided us with the percentage of patients suffering the morbidities and the medical expert said that the effects only last for a month after the test, we subjectively assumed that the quality of life of patients due to the morbidities follow a uniform distribution in the interval [ 0,1]. We have accordingly selected in this case the type of distribution with maximum entropy. This estimation of the quality of life is imprecise, but the subsequent sensitivity analysis demonstrated that the calculated strategy was not sensitive to the uncertainty in the morbidity parameters.

Although λ was known with certainty, we attached it a secondorder distribution in order to analyze its variations in the sensitivity analysis phase. A Gamma distribution was assigned to λ, as it is constrained in the interval [ 0,+∞) [27] and it can be interpreted as a cost. Briggs et al. [27] suggest the use of gamma for costs because the count data of costs is often usually represented by the Poisson distribution, and the Gamma is the conjugate to the Poisson.
The parameters of the secondorder distributionswere estimated from the medical literature. Different methods were used to fit these distributions. In the case of Beta distributions, four different methods were used depending on the values provided by the literature:

1.
If the source indicated that m cases of interest were observed from a set of n observations, then we elicited a Beta with shape parameters α=m and β=n.

2.
If the source only provided mean μ, we set a coefficient of variation k, and we assigned the standard deviation as σ=k·μ. Then by using the method of moments [27] we calculated the shape parameters α and β: z=(μ·(1−μ)·σ^{2})−1, α=z·μ, β=z−α. We have taken the value k=1/5, following Bond et al. [29, 30] in a study commissioned by the National Institute for Health and Care Excellence (NICE). If μ was so close to 1 that it was inconsistent to have a Beta with such parameters μ and σ, then we took the value k=10^{−m}·1/5 for setting σ, where m is the minimum natural number guaranteeing consistency.

3.
If the source provided mean μ and the 95 % confidence interval (CI) [ l,u] of the parameter, we found a Beta distribution with mean μ so that the interval [ l,u] accumulated a 95 % of the probability mass. Given mean μ and considering α an independent parameter, we have β=α·(1−μ)/μ. Then we used a bisection method to find the value of α that fulfills F(u)−F(l)=0.95, being F the cumulative distributive function of Beta.

4.
If the source provided mean μ and two values l and u, the latter being the maximum and the minimum values respectively, but the authors did not indicate that l and u referred to the 95 % CI, then by assuming that the interval [ l,u] accumulates 99.9 % of the probability mass we elicited the distribution analogously to point 3. This value is arbitrary but does not significantly affect the sensitivity analysis results.
In the case of the Gamma distribution of λ, we followed an approach similar to case 3 above: a mean μ was obtained from the source, and we assigned the standard deviation σ=k·μ, being k the coefficient of variation explained above.
Tables 2, 3, 4, 5 and 6 present all the independent parameters. Subindices attached to the CIs indicate the type of distribution and the type of elicitation used: numbers 1 to 4 correspond to a point above for the Beta distribution, and number 5 corresponds to uniform distributions.
All the explanation capabilities for IDs that Elvira and OpenMarkov offer were useful in this quantitative phase of model construction [20, 21]. The display of several evidence cases made it possible to introduce evidence from medical tests and to study its effect on the posterior probability of the variable N2_N3. For example, Fig. 3 shows two evidence cases in OpenMarkov: the first one (colored in red) contains no evidence and the probability of each variable is the prior probability; the second case (colored in blue) contains two contradictory findings, as the CT scan is positive and the TBNA is negative. The bars in node N2_N3 show that the probability of positive N2_N3 is lower in the second case than the prior probability. When the pneumologist asked us why the model recommended not performing a certain test, we could impose a policy on that test and analyze the outcomes. This phase of debugging was essential for checking the external consistency of the model, as recommended in [31].
Results
Computation and representation of optimal strategies
The first step after building the model was to evaluate the reference case of MEDIASTINET, i.e., the version in which every parameter of the model is set to the mean of its associated secondorder probability distribution. To have an idea of how big is the search space of evaluating MEDIASTINET, we must note that the size of the set of possible strategies for the set of test decisions is 2.44×10^{11}.
Two strategies were computed using two different criteria: maximizing effectiveness (disregarding costs) and maximizing the NHB. The former was carried out by setting λ^{−1} to 0, which according to Eq. 1 means that costs are ignored. In the latter, λ^{−1}=1/(30,000 €/QALY) because the shadow willingnesstopay threshold for the Spanish public health system was estimated to be 30,000 €/QALY [8, 9]. This threshold is consistent with the ones proposed by the World Health Organization for determining whether an intervention is considered costeffective [32, 33].
Computing these two strategies with different criteria helps to fulfill the recommendation of checking the internal consistency of the model [31] by assigning extreme values for some parameters. In our case, we should expect that the strategy provided by the model when setting λ^{−1} to 0 would tend to select expensive tests that are discarded when λ=30,000 €/QALY.
These two versions of the ID were evaluated using the variable elimination algorithm [34]. The decision table for each decision grows exponentially with the number of variables known when making the decision. These tables are not an adequate output for a human expert, not only because of their size—for example, the policy table for decision Treatment has 15,552 columns—but also because most of the columns correspond to impossible scenarios. For this reason, an algorithm [35] was developed to transform the set of decision tables into a single strategy tree, as shown in Figs. 4 and 5. This algorithm builds an auxiliary Bayesian network from the ID by replacing each decision node with a chance node whose probability potential is taken from the corresponding decision table obtained in the evaluation. The strategy tree is then built incrementally by pruning the scenarios incompatible with the policies for previous decisions.
Strategy disregarding costs
When costs are disregarded and the CT scan is positive, a TBNA, EBUS, and EUS are performed. If the TBNA is positive and the EBUS and EUS are negative, then doing a mediastinoscopy is recommended; otherwise, a mediastinoscopy is not necessary. If the TBNA is negative, then a mediastinoscopy is performed only if the EBUS and the EUS give contradictory results.
When the CT scan is negative, a PET, EBUS, and EUS are performed. If the PET is positive, then doing a mediastinoscopy is recommended only when the EBUS and EUS are negative. If PET is negative, then a mediastinoscopy is performed only when the EBUS and EUS give contradictory results.
With regards to the treatment, when the TBNA or the PET is positive and EBUS and EUS are the last tests to perform, then the optimal therapy is chemoradiotherapy if the EBUS or EUS is positive, and thoracotomy otherwise. When the TBNA or the PET is negative or when the mediastinoscopy is performed, in all cases the optimal therapy is chemoradiotherapy when the last test is positive and thoracotomy when it is negative.
Strategy with costs
When λ=30,000 €/QALY, a positive CT scan must be followed by a TBNA. An EBUS is done only when the CT scan or the TBNA are negative. PET is never carried out; put another way, PET is never costeffective for this value of willingness to pay. The optimal therapy is chemoradiotherapy when the last test is positive and thoracotomy when it is negative.
Sensitivity analyses
Given the uncertainty of the numerical parameters, three types of sensitivity analyses were performed.
The first type of analysis is based on the expected value of perfect information (EVPI); it computes the gain in expected utility that we would obtain if the value of the parameter to study were known with certainty [36]. For the proposed model, the EVPI was lower than 10^{−2} for all parameters except for the specificity of the EBUS when the CT scan is negative.
The second type of analysis is not probabilistic. Let I^{∗} be the optimal strategy of the ID. This analysis consisted of finding the thresholds of strategy change, whichdefine the intervals within the parameter variation range such that I^{∗} remains optimal. The thresholds were found by discretizing the parameter variation range and then by determining for each parameter value whether the optimal strategy was identical to I^{∗}. This analysis showed that the three parameters with the reference values closest to the strategy change thresholds were, in the following order: the two specificities of the EBUS (when the CT scan is positive and when it is negative) and the specificity of the TBNA when the CT scan is negative. A small variation in the value of the specificity of the EBUS was likely to have an impact because its reference value, 0.995, was very close to the threshold 0.99.
The third type of analysis, sensitivity of each decision to each parameter, measured the probability of a change in the optimal strategy given the secondorder uncertainty of each parameter. In the proposed model, the three parameters that led to the highest probabilities were, in the following order: (1) the QALE of chemoradiotherapy survivors when there is metastasis, (2) the QALE of thoracotomy survivors when there is metastasis, and (3) the specificity of the EBUS when the CT scan is negative. The decisions most affected by variations in these parameters were, in this order, Dec_EBUS_EUS and Dec_TBNA.
This third metric is inspired in acceptability curves commonly used in health economic evaluation analyses [27]. An acceptability curve corresponds to a twoaxis graph, in which the Xaxis represents the values in a variation interval of a parameter, and the Yaxis represents the probability of a new intervention of being costeffective in comparison to a control intervention. The third metric presented here computes instead the probability that the optimal intervention remains optimal, i.e. is more costeffective than any other strategy; then we define the metric as the complementary of such a probability.
The main conclusion of these analyses is that the resulting strategy is robust to the uncertainty of the numerical parameters because only the specificity of the EBUS when the CT scan is negative had a significant impact on the optimal strategy.
Discussion
When the strategies illustrated in Figs. 4 and 5 were presented to the expert, he agreed with the optimal therapy calculated by the system. He would follow a slightly different strategy that repeats some tests in specific cases (restaging), a possibility that was not considered in this research, but he was not sure whether this strategy is better than that recommended by MEDIASTINET.
Overall, he was favorably impressed by the “intelligence” displayed by this model. In particular, he was surprised that the model recommended TBNA when the CT scan is positive, which differs from current practice, but he thinks that this recommendation should be discussed by the pneumology community because TBNA is a cheap and useful technique that could avoid an EBUS, an expensive test, for many patients. One advantage of using an explicit decision model, publicly available, is that experts can resolve their differences by introducing different parameters into the model and comparing its recommendations. Accordingly, experts from a country other than Spain can introduce different numerical parameters into the model and thereby obtain the results from the perspective of their public health system.
The work presented in this paper has several limitations. First, we have assumed that decisions are totally ordered in MEDIASTINET. However, the optimal strategy could be different if other orderings are allowed in the model. Second, the result of PET after a CT scan can influence the sensitivity and specificity of EBUS, EUS, TBNA and mediastinoscopy; if we removed this assumption of independence (by drawing arcs from PET to such tests), the model could recommend PET in certain scenarios of the strategy with costs. Third, PET can help to detect distant metastasis, which might lead to a different treatment but is beyond the scope of the model. Fourth, some authors are recently combining EBUS and EUS as a single technique where each test analyzes different regions in the mediastinum.
The results were evaluated by a single expert; other experts might disagree with the hypotheses of the model, the numerical parameters, and the assessment of the strategies obtained from the ID. However, the advantage of the recommendations offered in this paper is that they derive from an evidencebased model, which is publicly available, together with an opensource software tool for evaluating it. An expert who disagrees with the conclusions of our study can easily modify the model and analyze the resulting recommendation.
We followed a manual approach for building the ID because the causal relations were very wellknown and we did not have enough clinical data; we incorporated all the numerical parameters from the literature. If we have had enough clinical data, other ways of building the model would have been to learn automatically the structure from a data set [37], or to use a hybrid approach, such as interactive learning [19], to allow the expert to participate in the model construction. Sesen et al. [38] offer a good study of the application of learning algorithms for the construction of a Bayesian network for lung cancer.
To have an idea of why we chose to build an ID instead of a decision tree, we can give information here about the size of the decision tree. The number of leaves in the symmetric decision tree can be calculated as the product of the number of decision scenarios and the number of ordinary utility nodes. The number of decision scenarios can be calculated as the cardinal of the Cartesian product of the domains of all chance and decision variables [39], which in the case of the proposed ID it is 186,624. The number of ordinary utility nodes in the ID is 15. Thus, the total number of leaves in the symmetric decision tree is 186,624×15=2,799,360, which implies the use of a decision tree is prohibitive in our decision problem.
Related work
As mentioned in the introduction, Nease and Owens [40] built an ID for the same problem. The model proposed here differs from theirs in several respects. First, MEDIASTINET considers the morbidities of the tests and the cost of tests and therapies, as well as the willingness to pay, λ. Four new diagnostic tests that were not routinely used in 1997 [40], have been included in MEDIASTINET, namely TBNA, PET, EBUS,and EUS. In line with current practice, MEDIASTINET assumes that a CT scan is always performed. In MEDIASTINET the result of the CT scan influences the sensitivity and specificity of subsequent tests because it gives valuable information about where to stick the needle when doing other tests. One possible treatment is not to treat the pateient, although according to MEDIASTINET it is never the optimal therapy.
As a result of these additions, MEDIASTINET is much bigger and more complex than the model of Nease and Owens [40]. In particular, the decision table for treatment in their model had 72 columns, whereas the number of columns is 15,552 in MEDIASTINET.
Different authors have applied decision trees^{3} to the diagnosis of lung cancer. Different authors [41–44] build different decision trees for assessing the efficacy of PET compared to a baseline strategy that only uses a CT scan. Dietlein et al. [45] performs a similar study, but adding the possibility of performing a mediastinoscopy in certain scenarios. In contrast to these proposals, our model contains additional diagnostic tests (TBNA, EBUS and EUS), and exhaustively studies a much bigger set of strategies.
Closely related to our work, Barosi et al. [46] performed a costeffectiveness analysis of testing for occult cancer in idiopathic deep vein thrombosis. Their model first decides which cancer to investigate, and, next, for each cancer, it then has two options: (1) to perform a noninvasive test, and, if positive, to perform the most invasive test, and (2) to perform directly the most invasive test. In contrast to our model, Barosi et al. only considered two tests for each cancer, as they had to study a set of different cancers. They only studied two strategies of testing for each cancer, while our model can decide which tests are more appropriate in each scenario, and thus, explore a bigger set of strategies.
Other artificial intelligence approaches have been applied to the diagnosis of lung cancer. Wu et al. [47] selected and grouped some tumor biomarkers through multiple logistic regression, and then used them as inputs for an artificial neural network. Wnuk et al. [48] used an artificial neural network for predicting mediastinal lymph node metastases in NSCLC. Nie et al. [49] studied the diagnosis and prediction of lung cancer of three models with tumor markers based on different classification approaches: logistic regression analysis, decision tree induction and artificial neural networks. Despite the high diagnostic capabilities of these approaches, we think it would still be necessary to integrate them into a framework that can automatically calculate the optimal decisions based on utilities such as costs, life expectancy and willingnesstopay, similar to what, for example, an ID can do.
Conclusions
There is a vigorous debate among medical specialists about the optimal sequence of tests for the mediastinal staging of NSCLC [3, 4]. For this reason, we have built MEDIASTINET, a probabilistic model that combines objective data and subjective estimates. It is publicly available and can be evaluated with OpenMarkov. Experts can populate this model with different parameters and analyze whether their differences of opinion are due to discrepancies in the conditional probabilities they are using or to different structural hypotheses. Accordingly, the model proposed here might be a useful decision analysis tool for reaching a consensus.
Moreover, the explicit inclusion of willingness to pay in the proposed model makes it possible to adapt it to each decisionmaker; for example, in rich countries λ is much higher than in poor regions.
From the perspective of IDs, one contribution of this work is the algorithm for synthesizing huge decision tables into very compact strategy trees, a facility that is not available in other software packages for IDs other than in OpenMarkov.
The quantitative uncertainty in our model has been represented by assigning to each independent parameter the most appropriate distribution, as is usual in the literature. We have applied three metrics for sensitivity analysis: the EVPI of each parameter, the strategy change thresholds, and the sensitivity of each decision to each parameter. These three methods have proven that the proposed model is robust to numerical parameter uncertainty, except the specificity of the EBUS when the CT scan is negative.
As a possibility for future work, we can refine the ID by making the result of PET influence the sensitivity and specificity of subsequent tests. This task would require an indepth review of the literature due to the exponential growth of the number of parameters required in probability tables.
We may allow partial orderings of the decisions by building a decision analysis network (DAN) [50] instead of an ID. However, the main difficulty would be collecting clinical data to elicit these parameters.
The expert would also like to include in the model the possibility of repeating some diagnostic tests to some patients with N2positive, previously treated with chemotherapy, to reevaluate them as candidates for surgery, in a process known as restaging. For that purpose, various dynamic representations could be considered, such as partially observable Markov decision processes[51], and dynamic limited memory influence diagrams [52], but again the problem would be the lack of clinical data to estimate the numerical parameters.
Our model assumes that a CT scan is performed on every patient. However, it would be interesting to select a different starting point for the test sequence.
We could constitute a panel of experts to know their opinion about the results of the model. As we mention above, debugging MEDIASTINET with OpenMarkov should help to reach a consensus when experts disagree.
An interesting future work would be to obtain access to a large data set and then to consider learning automatically the model [37], in a similar way to how Sesen et al. [38] built a Bayesian network for lung cancer.
Another line for future research would be to develop new explanation capabilities, which are crucial to facilitate construction of probabilistic decision models and to communicate with experts [20, 21].
Data availability
The model is publicly available at http://www.probmodelxml.org/networks/id/IDmediastinet.pgmx. It can be evaluated with OpenMarkov, an opensource software tool that can be downloaded from http://www.openmarkov.org.
Endnotes
^{1} Ideally, we would also want to minimize other quantitative factors, such as the emotional costs involved for the patient and her/his family, as an ID model for neonatal jaundice did [53]. However, including more criteria apart from monetary and health functions, would require an additional study of the additivity properties in the utility function so that it would still be possible to use the framework of IDs with SVNs.
^{2} Since all costs considered in the model are economic, in the rest of the paper we will just use the term cost to refer to them.
^{3} When mentioning “decision trees” we are referring to the treelike representation of decision problems under uncertainty [54] used in decision analysis, in contrast to induction decision tree approaches used in automatic learning and classification [55].
Abbreviations
 CI:

Confidence interval
 CT:

Computed tomography
 EBUS:

Endobronchial ultrasound
 EUS:

Endoscopic ultrasound
 EVPI:

Expected value of perfect information
 ID:

Influence diagram
 NHB:

Net health benefit
 NSCLC:

Nonsmall cell lung cancer
 PET:

Positron emission tomography
 QALE:

Quality adjusted life expectancy
 QALY:

Quality adjusted life year
 SVN:

Supervalue node
 TBNA:

Transbronchial needle aspiration
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Acknowledgements
This work has been supported by the Department of Education of Madrid and the European Social Fund under a doctoral grant, by the Spanish Ministry of Education and Science under grants TIN200611152 and TIN200909158, and by the Carlos III Health Institute of the Spanish Government under grant PI13/02446. We would also like to thank all the developers of Elvira and OpenMarkov.
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The authors declare that they have no competing interests.
Authors’ contributions
ML and FJD were equally involved in the construction of the model and the preparation of the manuscript. CD advised in the construction of the model and carried out critical revisions of the manuscript. All authors approved the final version of the manuscript.
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Luque, M., Díez, F. & Disdier, C. Optimal sequence of tests for the mediastinal staging of nonsmall cell lung cancer. BMC Med Inform Decis Mak 16, 9 (2016) doi:10.1186/s129110160246y
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Keywords
 Decision making under uncertainty
 Costeffectiveness analysis in medicine
 Probabilistic graphical models
 Influence diagrams
 Bayesian networks