Combining unsupervised, supervised and rule-based learning: the case of detecting patient allergies in electronic health records

Berge, Geir Thore; Granmo, Ole-Christoffer; Tveit, Tor Oddbjørn; Ruthjersen, Anna Linda; Sharma, Jivitesh

doi:10.1186/s12911-023-02271-8

BMC Medical Informatics and Decision Making

Table 3 Top 10 nearest neighbor (type of allergen-related) words returned by the unsupervised word embedding methods. Words co-occurring in the gold-standard similarity list of words are emphasized

From: Combining unsupervised, supervised and rule-based learning: the case of detecting patient allergies in electronic health records

	Type of allergen
Method	Drugs: Apocillin		Environmental: Cat		Food: Cultured milk
Our unsupervised method	Apocillin mg	Paracet	Cat and	House dust	Biola	Orange juice
	Apocillin tab	Dalacin	Cat dog	Mite	Applejuice	*Oats soup*
	Penicillin	Ekvacillin	And cat	Wormwood	Apple juice	Whole milk
	Imacillin	Diclocil	Dog	Pollen	Buttermilk	Or juice
	Ciproxin	Keflex	Timothy	Horse	Coffee	Juice
StarSpace	Ciproxin	Abboticin	Dog	Grass	Drink	*Strawberries*
	Doxylin	Amoxicillin	Mite	Wormwood	*Omelet*	Biola
	Diclosil	Selexid	House dust mite	Dust	*Scrambled eggs*	*Piece of bread*
	Imacillin	Diclocil	Mold fungus	House dust	*Youghurt*	*Cereal*
	Apocillin	Erymax	Pollen	Nuts	*Dessert*	*White bread*
Word2vec Skip-gram	Doxylin	Abboticin	Dog	Timothy	*Fishballs*	Drunk juice
	Imacillin	Ciproxin	House dust Mite	Wormwood	Orange juice	*Tomato*
	Amoxicillin	Bactrim	Mold fungus	Dog cat	Buttermilk	*Cereal*
	Ery Max	Penicillin	Grass	Cat dog	Extra lowfat milk	Buttermilk
	Diclocil	Keflex	Pollen	Birch	*Cocoa*	*Cucumber*
Word2vec CBOW	Imacillin	Ery max	Dog	Mold fungus	*Chocolate pudding*	Two cups
	Ery Max	Penicillin	Wormwood	Dog cat	Juicebased	*Pancake*
	Amoxicillin	Weifapenin	House dust mite	Animals	*Cauliflower soup*	*Semulina porridge*
	Doxylin	Keflex	Guinea pig	Cat horse	*Yogurt*	*Cream of rice*
	Abboticin	Diclocil	Cat dog	Grass	*Crispbread*	Whole dinner
fastText Skip-gram	Imacillin	Apocillin 1 g	Treasure	Splashed	Milk	Gl lowfat milk
	Amoxycillin	Bactrim Apocillin	Dog cat	In at	Milk juice	Soy milk
	Amoxicillin	Doktacillin	Mite cat	Batt	Orangejuice	Chocolate milk
	Acillin	Dicillin	Cat bite	Tax arrears	Orangejuice	Whole milk
	Doxycillin	Imacillin	Cat hair	Padding	Rice milk	Chocomilk
fastText CBOW	Imacillin	Apocilling	Dog	Cat housedust	Whole milk	Chocomilk
	Apocillin	Bactrim Apocillin	Cat dog	Cat hair	*Yogurt*	Chocolate milk
	Apocillin Bactrim	Apocillin 1 g	Cats	Animals	*Jogurt*	Lowfat milk
	Ery max	Apocilin	Dogs cats	Wormwood	*Chocolate pudding*	Orange juice
	Amoxicillin	Doktacillin imacillin	House dust mite	Mite	Chocolate taste	Buttermilk
GloVe	Imacillin	Dalacin	Dog	Wormwood	*Semolina porridge*	*Pommes frites*
	Ciproxin	Bactrim	Mold fungus	Cat and dog	*Cauliflower soup*	Drunk juice
	Doxylin	Ery max	*Nickel*	Grass	*Caramel cream*	*Gruel*
	Penicillin	Keflex	Dog and cat	House dust mite	Coffee	*Crispbread*
	Diclocil	Selexid	House dust	Horse	*Oatmeal*	Buttered milk

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ISSN: 1472-6947

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