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Table 11 Examples of errors and predictions of each neural model (B: BERT; F: Flair; SL: SequenceLabeler)

From: A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine

Type

Example

Model

Ambiguity

el nivel de fósforo se redujo (‘phosphorus level decreased’)

Prediction:

O B-PROC I-PROC I-PROC O O

✗: B, F, SL

Reference:

O O O B-CHEM O O

 
 

grupos de 20 miembros (‘20-member groups’)

 

Prediction:

O O O B-ANAT

✗: SL

Reference:

O O O O

: B, F

FNs

Lurbinectedin ( PM01183 ) (‘Lurbinectedin (PM01183)’)

 

Prediction:

O O O O

✗: SL

Reference:

B-CHEM O B-CHEM O

: B, F

 

episodios de NF (‘episodes of FN’ [‘febrile neutropenia’])

 

Prediction:

O O O

✗: B, SL

Reference:

O O B-DISO

: F

FPs

gen AVXS-101 (‘AVXS-101 gene’)

 

Prediction:

O B-CHEM

✗: B, SL

Reference:

O O

: F

 

estudio BREATH-19 (‘BREATH-19 study’)

 

Prediction:

O B-DISO

✗: SL

Reference:

O O

: B, F

Scope

eventos adversos graves (‘severe adverse events’)

 

Prediction:

B-DISO I-DISO I-DISO

✗: B, SL

Reference:

B-DISO I-DISO O

: F

 

cirugía ginecológica abierta (‘open gynecologic surgery’)

 

Prediction:

B-PROC I-PROC I-PROC

✗: B, F, SL

Reference:

B-PROC I-PROC O

 
 

estudios comparativos de la eficacia (‘compared efficacy studies’)

Prediction:

B-PROC O O O O

✗: SL

Reference:

B-PROC I-PROC I-PROC I-PROC I-PROC

: B, F