Table 3 Statistics on MHC region of simulation and HTS datasets
From: Fast read alignment with incorporation of known genomic variants
Aligner | Sim-i100 # a | Soft Sim-i100 # b | Sim-i250 # | Soft Sim-i250 # | HTS # | Soft HTS # |
|---|---|---|---|---|---|---|
deBGA-VARA | 3855 | 0 | 3716 | 0 | 3114 | 0 |
deBGA | 3750 | 40 | 3613 | 26 | 3025 | 96 |
BWA-MEM | 3735 | 113 | 3618 | 93 | 3058 | 179 |
BWBBLE n =2 | 3070 | 0 | 2742 | 0 | 2785 | 0 |
BWBBLE n =6 | 3616 | 0 | 3157 | 0 | 3005 | 0 |
vg | 3765 | 53 | 3620 | 61 | 3022 | 119 |