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Table 2 Statistics on HTS human datasets

From: Fast read alignment with incorporation of known genomic variants

Dataset

Aligner

Mapped % a

Unmapped # b

Soft # c

Time-t1(s)

Time-t8(s)

ERR174324

deBGA-VARA

98.1

37354

72301

565

79

 

deBGA

98.1

37479

87653

230

70

 

BWA-MEM

99.1

13725

116316

590

78

 

BWBBLE n =2

84.5

309005

0

892

219

 

BWBBLE n =6

88.8

223736

0

6192

1125

 

vg

98.1

28286

91585

13347

2092

  1. aThe mapping sensitivity rate.
  2. bNumber of unmapped reads.
  3. cNumber of soft clipping reads
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BMC Medical Informatics and Decision Making

ISSN: 1472-6947

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