BMC Medical Informatics and Decision Making

Table 1 Statistics on simulated human datasets

From: Fast read alignment with incorporation of known genomic variants

Dataset	Aligner	Accuracy % ^a	Unmapped # ^b	Soft # ^c	Time-t1(s)	Time-t8(s)
Sim-i100	deBGA-VARA	99.9	517	1221	114	41
	deBGA	99.9	526	4418	84	39
	BWA-MEM	99.9	0	40368	435	114
	BWBBLE n =2	86.6	972083	0	958	295
	BWBBLE n =6	95.2	92406	0	7378	1074
	vg	99.9	276	23878	10737	1986
Sim-i250	deBGA-VARA	99.9	32	291	212	70
	deBGA	99.9	38	1421	184	61
	BWA-MEM	99.9	0	37830	924	182
	BWBBLE n =6	80.0	398745	0	16483	2387
	BWBBLE n =10	84.4	310725	0	53126	8897
	vg	99.9	12	25451	19164	3761

^aThe mapping accuracy rate.
^bNumber of unmapped reads.
^cNumber of soft clipping reads

Back to article page

ISSN: 1472-6947

Contact us

General enquiries: journalsubmissions@springernature.com