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Table 2 Performance comparison

From: Automatic extraction of protein-protein interactions using grammatical relationship graph

Corpus

HPRD50

IEPA

LLL

PICADb

 

F

P

R

F

P

R

F

P

R

F

P

R

Bui et al. [24]

71.7

62.2

84.7

73.4

62.9

88.1

83.6

81.9

85.4

–

–

–

Miwa et al. [49]

70.9

68.5

76.1

71.7

67.5

78.6

80.1

77.6

86.0

–

–

–

Chang et al. [48]

71.5

63.8

81.2

71.4

62.5

83.3

80.6

73.2

89.6

–

–

–

Murugesan et al. [73]

80.0

76.3

84.2

80.2

75.9

85.2

89.2

87.3

91.2

–

–

–

aZhao et al. [81]

71.3

58.7

92.4

74.2

67.0

84.0

82.0

75.8

91.8

–

–

–

GRGT

64.0

86.5

50.8

74.9

91.0

63.6

83.6

91.2

77.1

70.0

78.2

63.4

  1. Performance comparison of our method (GRGT) with top-performing methods on four benchmark datasets. F F1-score, P precision, R recall. The measurement is out of 100. adeep learning method. bValues are not available because of the unavailability of executable program or source code