Table 5 Results on rare disease identification (Text-to-ORDO) from MIMIC-III discharge summaries
From: Ontology-driven and weakly supervised rare disease identification from clinical notes
validation (n=64+/400) | test (n=82+/673) | |||||
|---|---|---|---|---|---|---|
Text to ORDO | P | R | \(F_{1}\) | P | R | \(F_{1}\) |
SemEHR [15] | 18.7 | 95.3 | 31.3 | 13.9 | 92.7 | 24.1 |
+ rules | 53.9 | 75.0 | 62.7 | 49.0 | 86.6 | 62.6 |
+ WS (rules+BERT) | 67.6 | 75.0 | 71.1 | 64.7 | 80.5 | 71.7 |
+ SS (anns+BERT) | - | - | - | 73.3 | 80.5 | 76.7 |