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Table 1 Examples of false positives mention-UMLS pairs in entity linking identified from SemEHR and Bio-YODIE

From: Ontology-driven and weakly supervised rare disease identification from clinical notes

Mention in a context window

Meaning

False positive UMLS

temporary HD line was pulled.

Medical device

Huntington Disease

... male with ESRD on HD ...

Haemodialysis

(C0020179) or

... Asacol HD 800 mg Tablet ...

Medication

Hodgkin Disease

CT scan on HD9 showed ...

Hospital Day

(C0019829)

  1. Each mention is bolded in its context window