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Table 5 Ablation experiment results of the proposed NER model using micro-averaged F1-score on the relations provided in the i2b2-clinical testset

From: Entity and relation extraction from clinical case reports of COVID-19: a natural language processing approach

Model

i2b2-clinical

Full: proposed RE model

90.12

Without fine-tuning step

82.35

Without a full Transformer layer

78.9

  1. Bold means best score