Table 3 Comparison of results for models for the excessive diet case study
Model | Weighted avg | Normal diet | High calorie diet | ||||||
|---|---|---|---|---|---|---|---|---|---|
Precision | Recall | F1 | Precision | Recall | F1 | Precision | Recall | F1 | |
Rule-based | 0.91 | 0.86 | 0.87 | 0.52 | 0.92 | 0.67 | 0.94 | 0.94 | 0.94 |
Logistic regression | 0.88 | 0.85 | 0.85 | 0.50 | 0.83 | 0.63 | 1.00 | 0.94 | 0.97 |
Random forest | 0.89 | 0.86 | 0.86 | 0.52 | 0.89 | 0.66 | 1.00 | 0.94 | 0.97 |
SVM | 0.88 | 0.85 | 0.85 | 0.50 | 0.83 | 0.63 | 1.00 | 0.94 | 0.97 |
BERT base | 0.91 | 0.91 | 0.91 | 0.66 | 0.75 | 0.70 | 1.00 | 0.98 | 0.99 |
Bio BERT | 0.92 | 0.92 | 0.92 | 0.71 | 0.78 | 0.74 | 1.00 | 0.98 | 0.99 |
PubMed BERT (Abs) | 0.91 | 0.90 | 0.90 | 0.59 | 0.81 | 0.68 | 1.00 | 1.00 | 1.00 |
PubMed BERT (Abs + Ft) | 0.90 | 0.90 | 0.90 | 0.63 | 0.64 | 0.62 | 1.00 | 1.00 | 1.00 |
Bio-clinical BERT | 0.93 | 0.93 | 0.93 | 0.73 | 0.75 | 0.73 | 1.00 | 1.00 | 1.00 |
UMLS BERT | 0.92 | 0.92 | 0.92 | 0.72 | 0.69 | 0.70 | 1.00 | 1.00 | 1.00 |
High fat diet | High salt diet | Nonspecific abnormal | |||||||
|---|---|---|---|---|---|---|---|---|---|
Precision | Recall | F1 | Precision | Recall | F1 | Precision | Recall | F1 | |
Rule-based | 1.00 | 0.90 | 0.95 | 1.00 | 0.95 | 0.97 | 0.92 | 0.61 | 0.73 |
Logistic regression | 0.95 | 0.95 | 0.95 | 1.00 | 1.00 | 1.00 | 0.82 | 0.50 | 0.62 |
Random forest | 0.95 | 0.95 | 0.95 | 0.98 | 1.00 | 0.99 | 0.87 | 0.50 | 0.64 |
SVM | 0.95 | 0.95 | 0.95 | 1.00 | 1.00 | 1.00 | 0.81 | 0.50 | 0.62 |
BERT base | 0.98 | 1.00 | 0.99 | 1.00 | 1.00 | 1.00 | 0.82 | 0.74 | 0.78 |
Bio BERT | 0.98 | 0.98 | 0.99 | 1.00 | 1.00 | 1.00 | 0.85 | 0.80 | 0.82 |
PubMed BERT (Abs) | 1.00 | 0.98 | 0.99 | 1.00 | 1.00 | 1.00 | 0.84 | 0.65 | 0.73 |
PubMed BERT (Abs + Ft) | 1.00 | 0.98 | 0.99 | 1.00 | 1.00 | 1.00 | 0.77 | 0.76 | 0.76 |
Bio-clinical BERT | 1.00 | 0.98 | 0.99 | 1.00 | 1.00 | 1.00 | 0.85 | 0.83 | 0.84 |
UMLS BERT | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.81 | 0.81 | 0.81 |