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Table 10 Average P, R and F1 (±standard deviation) per entity type (test set)

From: A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine

SeqLabeler   Precision Recall F-measure
ANAT 62.32 (±6.27) 56.74 (±4.48) 59.06 (±2.27)
CHEM 85.81 (±2.47) 82.94 (±1.84) 84.32 (±1.29)
DISO 82.35 (±1.55) 81.11 (±1.69) 81.70 (±0.91)
PROC 78.94 (±1.98) 79.91 (±1.72) 79.40 (±1.25)
Flair ANAT 71.10 (±2.62) 62.25 (±1.24) 66.36 (±1.63)
CHEM 85.98 (±0.62) 87.30 (±0.34) 86.63 (±0.33)
DISO 84.68 (±0.29) 85.04 (±0.29) 84.86 (±0.13)
PROC 79.90 (±0.36) 81.86 (±0.37) 80.86 (±0.27)
BERT ANAT 63.38 (±2.14) 63.88 (±2.61) 63.56 (±1.08)
CHEM 91.47 (±0.50) 90.74 (±0.51) 91.10 (±0.36)
DISO 90.23 (±0.26) 88.43 (± 0.56) 89.32 (±0.23)
PROC 85.20 (±0.43) 80.87 (±0.54) 82.98 (±0.30)