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Table 10 Average P, R and F1 (±standard deviation) per entity type (test set)

From: A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine

SeqLabeler

 

Precision

Recall

F-measure

ANAT

62.32 (±6.27)

56.74 (±4.48)

59.06 (±2.27)

CHEM

85.81 (±2.47)

82.94 (±1.84)

84.32 (±1.29)

DISO

82.35 (±1.55)

81.11 (±1.69)

81.70 (±0.91)

PROC

78.94 (±1.98)

79.91 (±1.72)

79.40 (±1.25)

Flair

ANAT

71.10 (±2.62)

62.25 (±1.24)

66.36 (±1.63)

CHEM

85.98 (±0.62)

87.30 (±0.34)

86.63 (±0.33)

DISO

84.68 (±0.29)

85.04 (±0.29)

84.86 (±0.13)

PROC

79.90 (±0.36)

81.86 (±0.37)

80.86 (±0.27)

BERT

ANAT

63.38 (±2.14)

63.88 (±2.61)

63.56 (±1.08)

CHEM

91.47 (±0.50)

90.74 (±0.51)

91.10 (±0.36)

DISO

90.23 (±0.26)

88.43 (± 0.56)

89.32 (±0.23)

PROC

85.20 (±0.43)

80.87 (±0.54)

82.98 (±0.30)