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Table 3 The classes and properties reused or created for OD-ATTEST

From: An ontology-based documentation of data discovery and integration process in cancer outcomes research

 

Label

Internationalized Resource Identifiers (IRIs)a

Reference ontology

Classes

objecitve

iao:0000005

IAOb

data source

iao:0000100

measurement datum

iao:0000109

dependent variable

obi:0000751

OBIc

independent variable

obi:0000750

controlled variable

obi:0000785

data processing

obi:0200000

study

ncit:C63536

NCItd

hypothesis

ncit:C28362

rationale

ncit:C80263

primary outcome

ncit:C142644

secondary outcome

ncit:C142680

sample size

ncit:C53190

missing data

ncit:C142610

data validation

ncit:C142500

data type

ncit:C42645

data collection method

ncit:C103159

data analysis

sio:001051

SIOe

minimum value

stato:0000150

STATOf

maximum value

stato:0000151

median

stato:0000574

mean

stato:0000573

value range

stato:0000035

percentile

stato:0000293

data distribution

stato:0000161

statistical sampling

stato:0000502

outlier

stato:0000036

primary predictor

od-attest:000015

OD-ATTESTg

secondary predictor

od-attest:000016

demographic distribution

od-attest:000093

outcome variable data source

od-attest:000019

predictor data source

od-attest:000094

cohort criteria

od-attest:000008

descriptive statistic

od-attest:000012

missing rate

od-attest:000068

data source time coverage

od-attest:000023

data source geographic coverage

od-attest:000024

sources of bias

od-attest:000051

data integration

od-attest:000052

data extraction

od-attest:000054

data cleaning

od-attest:000055

integration strategy

od-attest:000056

integrate variables from same level

od-attest:000057

integrate variables from different levels

od-attest:000058

creation of additional elements

od-attest:000059

integration algorithm

od-attest:000060

validation strategy

od-attest:000068

integrated variable

od-attest:000096

Properties

is determined by

od-attest:000097

OD-ATTEST

has rationale

od-attest:000098

has objective

od-attest:000099

has data source

od-attest:000100

has cohort criteria

od-attest:000101

has demographic distribution

od-attest:000102

has sources of bias

od-attest:000103

has controlled variable

od-attest:000104

has independent variable

od-attest:000105

has dependent variable

od-attest:000106

has data type

od-attest:000107

has descriptive statistics

od-attest:000108

has NIMHD level

od-attest:000109

has NIMHD domain

od-attest:000110

has data collection approach

od-attest:000111

has sample size

od-attest:000112

has missing data

od-attest:000113

has data integration

od-attest:000114

has data processing

od-attest:000115

has data validation

od-attest:000116

has integration strategy

od-attest:000117

extracted from

od-attest:000118

has description

od-attest:000119

has time coverage

od-attest:000120

has geographic coverage

od-attest:000121

  1. aPrefix: iao: <http://purl.obolibrary.org/obo/IAO_>; obi: <http://purl.obolibrary.org/obo/OBI_>; ncit: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
  2. sio: <http://purl.obolibrary.org/obo/SIO_>; stato: <http://purl.obolibrary.org/obo/STATO_>; od-attest: <http://purl.obolibrary.org/obo/OD-ATTEST/>
  3. bInformation Artifact Ontology
  4. cOntology for Biomedical Investigations
  5. dNational Cancer Institute Thesaurus
  6. eStatistics Ontology
  7. fSemanticscience Integrated Ontology
  8. gOntology for the Documentation of Variable and Data Source Selection and Integration Process