Table 1 Probability of ranking among the top five SNPs by posterior probability of inclusion, for SNPs that are associated with outcome. CIR denotes the cumulative incidence rate in the reference group, RSF denotes Random Survival Forests, BVSperfect denotes the proposed BVS algorithm assuming perfect self-reports and BVSe denotes the proposed BVS procedure. NTFP denotes a study design setting in which all self-reports following the first positive result are discarded and NMISS denotes the setting where there are no missed visits
From: Bayesian variable selection for high dimensional predictors and self-reported outcomes
CIR | sensitivity (φ1) | specificity (φ0) | RSF | BVSperfect | BVSe | BVSe |
|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | NTFP | NMISS |
0.1 | 1 | 1 | 0.70(±0.01) | 0.87(±0.01) | 0.87(±0.01) | 0.87(±0.01) |
0.1 | 1 | 0.9 | 0.41(±0.01) | 0.34(±0.01) | 0.30(±0.01) | 0.81(±0.01) |
0.1 | 0.75 | 1 | 0.68(±0.01) | 0.81(±0.01) | 0.84(±0.01) | 0.84(±0.01) |
0.1 | 0.61 | 0.995 | 0.63(±0.01) | 0.69(±0.01) | 0.74(±0.01) | 0.75(±0.01) |
0.3 | 1 | 1 | 0.80(±0.01) | 0.98(±0.01) | 0.98(±0.01) | 0.98(±0.01) |
0.3 | 1 | 0.9 | 0.58(±0.01) | 0.63(±0.01) | 0.68(±0.01) | 0.97(±0.01) |
0.3 | 0.75 | 1 | 0.78(±0.01) | 0.90(±0.01) | 0.95(±0.01) | 0.95(±0.01) |
0.3 | 0.61 | 0.995 | 0.74(±0.01) | 0.82(±0.01) | 0.88(±0.01) | 0.88(±0.01) |