Clinical text classification with rule-based features and knowledge-guided convolutional neural networks

Table 3 Macro F₁ scores and Micro F₁ scores of Solt’s system [5] (paper) and our method with word and entity embeddings

Disease	Solt’s paper [5]				Our method with word & entity embeddings
	Textual		Intuitive		Textual		Intuitive
	Macro F₁	Micro F₁	Macro F₁	Micro F₁	Macro F₁	Micro F₁	Macro F₁	Micro F₁
Asthma	0.9434	0.9921	0.9784	0.9894	0.9434	0.9921	0.9784	0.9894
CAD	0.8561	0.9256	0.6122	0.9192	0.8551	0.9235	0.6233	0.9345
CHF	0.7939	0.9355	0.6236	0.9315	0.7939	0.9355	0.6236	0.9315
Depression	0.9716	0.9842	0.9346	0.9539	0.9716	0.9842	0.9602	0.9727
DM	0.9032	0.9761	0.9682	0.9729	0.9056	0.9801	0.9731	0.9770
Gallstones	0.8141	0.9822	0.9729	0.9857	0.8141	0.9822	0.9689	0.9837
GERD	0.4880	0.9881	0.5768	0.9131	0.4880	0.9881	0.5768	0.9131
Gout	0.9733	0.9881	0.9771	0.9900	0.9733	0.9881	0.9771	0.9900
Hypercholesterolemia	0.7922	0.9721	0.9053	0.9072	0.7922	0.9721	0.9113	0.9118
Hypertension	0.8378	0.9621	0.8851	0.9283	0.8378	0.9621	0.9240	0.9484
Hypertriglyceridemia	0.9732	0.9980	0.7981	0.9712	0.9434	0.9961	0.7092	0.9630
OA	0.9594	0.9761	0.6286	0.9589	0.9626	0.9781	0.6307	0.9610
Obesity	0.4879	0.9675	0.9724	0.9732	0.4885	0.9696	0.9747	0.9754
OSA	0.8781	0.9920	0.8805	0.9939	0.8781	0.9920	0.8805	0.9939
PVD	0.9682	0.9862	0.6348	0.9763	0.9682	0.9862	0.6314	0.9742
Venous insufficiency	0.8403	0.9822	0.8083	0.9625	0.8816	0.9882	0.8083	0.9625
Overall	0.8000	0.9756	0.6745	0.9590	0.8016	0.9763	0.6768	0.9624

Scores in bold font means they are higher than the corresponding scores of the paper and Perl implementation

ISSN: 1472-6947