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Table 3 Macro F1 scores and Micro F1 scores of Solt’s system [5] (paper) and our method with word and entity embeddings

From: Clinical text classification with rule-based features and knowledge-guided convolutional neural networks

Disease Solt’s paper [5] Our method with word & entity embeddings
  Textual Intuitive Textual Intuitive
  Macro F1 Micro F1 Macro F1 Micro F1 Macro F1 Micro F1 Macro F1 Micro F1
Asthma 0.9434 0.9921 0.9784 0.9894 0.9434 0.9921 0.9784 0.9894
CAD 0.8561 0.9256 0.6122 0.9192 0.8551 0.9235 0.6233 0.9345
CHF 0.7939 0.9355 0.6236 0.9315 0.7939 0.9355 0.6236 0.9315
Depression 0.9716 0.9842 0.9346 0.9539 0.9716 0.9842 0.9602 0.9727
DM 0.9032 0.9761 0.9682 0.9729 0.9056 0.9801 0.9731 0.9770
Gallstones 0.8141 0.9822 0.9729 0.9857 0.8141 0.9822 0.9689 0.9837
GERD 0.4880 0.9881 0.5768 0.9131 0.4880 0.9881 0.5768 0.9131
Gout 0.9733 0.9881 0.9771 0.9900 0.9733 0.9881 0.9771 0.9900
Hypercholesterolemia 0.7922 0.9721 0.9053 0.9072 0.7922 0.9721 0.9113 0.9118
Hypertension 0.8378 0.9621 0.8851 0.9283 0.8378 0.9621 0.9240 0.9484
Hypertriglyceridemia 0.9732 0.9980 0.7981 0.9712 0.9434 0.9961 0.7092 0.9630
OA 0.9594 0.9761 0.6286 0.9589 0.9626 0.9781 0.6307 0.9610
Obesity 0.4879 0.9675 0.9724 0.9732 0.4885 0.9696 0.9747 0.9754
OSA 0.8781 0.9920 0.8805 0.9939 0.8781 0.9920 0.8805 0.9939
PVD 0.9682 0.9862 0.6348 0.9763 0.9682 0.9862 0.6314 0.9742
Venous insufficiency 0.8403 0.9822 0.8083 0.9625 0.8816 0.9882 0.8083 0.9625
Overall 0.8000 0.9756 0.6745 0.9590 0.8016 0.9763 0.6768 0.9624
  1. Scores in bold font means they are higher than the corresponding scores of the paper and Perl implementation
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