Table 4 Comparison of AmiGo 2, GoMiner, and VIADS

 Provide biological interpretation

–

√

–

 Upload data sets

–

√

√

 Select algorithm/versions

–

√

√

 Tune thresholds to filter

–

–

√

 Generate summary views

–

√

√

 Generate comparison views

–

–

√

 Acceptable data set

–

Genomics data, Microarray data, proteomics data

Data sets coded with hierarchical terminologies + usage frequencies

 Applicable terminologies

GO

GO

ICD9-CM, ICD10-CM, MeSH

 GO

√

√

–

 External links

√

√

–

 GO

√

√

–

 Tree-like structure

√ (GO)

√ (GO)

√ (Summary views)

 Statistical analysis results

–

√

√