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Table 5 Assessment of the effect of different variants as provided by the SIFT and PolyPhen algorithms showing disagreement: While for variants one and two only one program calculates a score resembling the (true) clinical findings, variant three is corroborated by both programs and agrees with the clinical findings

From: Variant information systems for precision oncology

rsID

SIFT

PolyPhen

Clinical evidence

rs104894359

0

0.361

Pathogenic

rs121913529

0

1

Pathogenic

rs1137282

0.85

0.012

Benign

Legend:

   

SIFT:

0 (deleterious) - 1 (tolerated)

PolyPhen:

0 (benign) - 1 (probably damaging)