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Table 2 Identifiers included in data model for cross-source entity identification

From: Variant information systems for precision oncology

Entity type Primary ID source Further ID sources
Gene Entrez gene Ensembl, RefSeq
Transcripts RefSeq Ensembl, UniProt
Disease names Disease ontology UMLS, human phenotype ontology (HPO)
Drugs DrugBank PharmGKB, FDA
Pathways KEGG Gene ontology, PathwayCommons, Reactome