Table 2 Identifiers included in data model for cross-source entity identification
Entity type | Primary ID source | Further ID sources |
|---|---|---|
Gene | Entrez gene | Ensembl, RefSeq |
Transcripts | RefSeq | Ensembl, UniProt |
Disease names | Disease ontology | UMLS, human phenotype ontology (HPO) |
Drugs | DrugBank | PharmGKB, FDA |
Pathways | KEGG | Gene ontology, PathwayCommons, Reactome |