Table 5 Relation extraction results over Variome corpus relations, with the Characteristics entity type aggregating its subtypes (Concept & Ideas, Disorders, Physiology, and Phenomena) based on 10-fold cross-validation and assuming gold-standard entity annotations
Relation | N | P | R | F |
|---|---|---|---|---|
Disease-has-Characteristics | 989 | 0.749 | 0.602 | 0.667 |
Mutation-has-Characteristics | 17 | 0.701 | 0.583 | 0.642 |
Gene-has-Characteristics | 230 | 0.876 | 0.699 | 0.778 |
Cohort-has-Characteristics | 239 | 0.886 | 0.734 | 0.803 |