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Table 6 Results for the second clinical question. The results given by the framework to the second clinical question. The list of individual tools that could solve the entire clinical question are listed at the top which are then followed by a list of the tools that could be combined, i.e. pipelined, for providing an answer to the given clinical question

From: Semantic biomedical resource discovery: a Natural Language Processing framework

Unique Tools List
SCORE TOOL NAME Identified (query)
3 = 1 (in) + 2 (out) miRNApath mirna (in)
gene expression (out)
kegg pathways (out)
3 = 1 (in) + 2 (out) mirPath mirna (in)
gene expression (out)
kegg pathways (out)
3 = 1 (in) + 2 (out) mirtarbase mirna (in)
gene expression (out)
kegg pathways (out)
No results found on this category ‘Pipeline Tools List’ for the given question
Single Tools List
SCORE TOOL NAME
4 (out) Get Pathway-Genes and gene description by Entrez gene id
4 (out) Arabidopsis thaliana Microarray Analysis
4 (out) MinePath
4 (out) EnrichNet API
4 (out) NCBI Gi to Kegg Pathway Descriptions
4 (out) MitoMiner API
4 (out) BiologicalNetworks API
4 (out) From cDNA Microarray Raw Data to Pathways and Published Abstracts
4 (out) HUMAN Microarray CEL file to candidate pathways
4 (out) ERGO Genome Analysis and Discovery System
4 (out) BioCyc API
4 (out) Mouse Microarray Analysis