Table 4 Results of the first clinical question. The results given by the framework to the first clinical question. The list of individual tools that could solve the entire clinical question are listed at the top which are then followed by a list of the tools that could be combined, i.e. pipelined, for providing an answer to the given clinical question
From: Semantic biomedical resource discovery: a Natural Language Processing framework
Unique Tools List | ||
|---|---|---|
SCORE | TOOL NAME | Identified (query) |
4.75 = 3 (in) + 1 (out) + 0.75 (tag) | National Cancer Institute SEER API | carboplatin & cancer (in) |
cancer (in) | ||
lung cancer (in) | ||
drug (out) | ||
4 = 3 (in) + 1 (out) | cBio Cancer Genomics Data Server | carboplatin & cancer (in) |
(CGDS) API | cancer (in) | |
lung cancer (in) | ||
find (out) | ||
4 = 1 (in) + 3 (out) | EUADR - Literature analysis | adverse effects (in) |
drug-references (out) | ||
drug (out) | ||
literature (out) | ||
Pipeline Tools List | ||
FIRST TOOL | SECOND TOOL | |
National Cancer Institue caDSR API | AIDSinfo API | |
China Cancer Database API | AIDSinfo API | |
Single Tools List | ||
SCORE | TOOL NAME | |
3.75 = 3 (in) + 3*0.25 (tag) | The Cancer Genome Atlas API | |
3.75 = 3 (in) + 3*0.25 (tag) | China Cancer Database API | |
3 (in) | National Cancer Institue caDSR API | |
3 (in) | MuTect | |
2.25 = 1 (out) + 5*0.25 (tag) | Lexicomp API | |
2 (out) | Arabidopsis thaliana Microarray Analysis | |
2 (out) | Pathways and Gene annotations for QTL region | |
2 (out) | SciBite API | |
2 (out) | DGIdb API | |
2 = 4*0.25 (tag) | DailyMed API | |
2 = 4*0.25 (tag) | Aetna CarePass API | |
2 = 4*0.25 (tag) | National Institute on Drug Abuse Drug Screening Tool API | |