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Table 5 The most applied software tools

From: An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors

Software systems

Usage Frequency

Web-based implementations*

40

R

31

MATLAB

16

MAS

16

SAS

16

GeneSpring [50]

14

Excel

12

TreeView [51]

12

S-PLUS

9

SPSS

8

Standalone programs implemented in C++ or Java

12

Gene Cluster (Cluster) [51]

10

Significance Analysis of Microarrays (SAM) [52]

6

BioMiner

2

Other proprietary implementations

73

  1. * implemented by authors or originating from related studies