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Table 1 List of variables used in the study (for both BRCA1 and BRCA2 populations), data types, and variable inclusion in Cox proportional hazards models (i) to (vi)

From: Can multiple SNP testing in BRCA2 and BRCA1 female carriers be used to improve risk prediction models in conjunction with clinical assessment?

Variable

Data type

Model (i)

Model (ii)

Model (iii)

Model (iv)

Model (v)

Model (vi)

Genetic predisposition score (GPS)

Numeric

✓

✓

   

✓

Year of birth

Numeric

 

✓

 

✓

✓

✓

Manchester score

Numeric (inverse hyperbolic sine scale)

 

✓

 

✓

✓

✓

Body mass index (BMI)

Numeric

 

✓

 

✓

✓

✓

Parity

Quartiles (q1 … q4) + missing category

 

✓

 

✓

✓

✓

Age of menarche

Quartiles (q1 … q4) + missing category

 

✓

 

✓

✓

✓

Age of menopause

Quartiles (q1 … q4) + missing category + ovulating stratum

 

✓

 

✓

✓

✓

Age of first full-term pregnancy

Quartiles (q1 … q4) + missing category + never had full term pregnancy

 

✓

 

✓

✓

✓

Oral contraception usage

Quartiles (q1 … q4)

 

✓

 

✓

✓

✓

Oophorectomy

Binary (yes vs. no)

 

✓

 

✓

✓

✓

Mastectomy

Binary (yes vs. no)

 

✓

 

✓

✓

✓

Individual single nucleotide polymorphisms (SNPs, rs614367, rs704010, rs713588, rs889312, rs909116, rs1011970, rs1156287, rs1562430, rs2981579, rs3757318, rs3803662, rs4973768, rs8009944, rs9790879, rs10995190, rs11249433, rs13387042, rs10931936)

Binary (yes vs. no)

  

✓

✓

 

✓